PlotMA

Plot MA plot from a geneda object. Requires that you have ran SetDEGs on your object following differential expression in DESeq2.

PlotMA(object, assay, alpha, l2fc, title = NULL)

Arguments

object

A geneda object containing DEGs from SetDEGs method

assay

The DEG slot to use for visualization

alpha

Threshold for adjusted p-values (padj column from DESeq2)

l2fc

Absolute value log2Fold-change magnitude threshold (log2FoldChange column)

title

Optional character vector of what plot should be titled.

Value

A ggplot2 object