Construct a geneda object — GenEDA • RGenEDA

Construct a geneda object

GenEDA(normalized, metadata, counts = NULL, DEGs = NULL)

Arguments

normalized: Normalized expression matrix (features x samples).
metadata: Sample metadata data.frame with row names matching colnames(normalized).
counts: Optional counts matrix (features x samples).
DEGs: Optional DEG results from DESeq2 Note: This constructor does not compute HVGs or PCA. Use FindVariableFeatures() and RunPCA() afterward.

Value

A geneda object.