PlotHVGVariance

Plot variance for all genes (features) on a geneda object using ggplot2.

PlotHVGVariance(object, transform = NULL, dropTopN = 0)

Arguments

object

A geneda object created by GenEDA().

transform

One of c("log") to log-transform variance, or NULL for none. Default = NULL

dropTopN

Number of top-most variable genes to drop prior to plotting. Default = 0

Value

A ggplot2 object visualizing the variance of HVGs

Examples

# obj <- GenEDA(vsd, meta)
# p <- PlotHVGVariance(obj, transform = "log")
# print(p)