Access HVG IDs

Usage

HVGs(object)

Arguments

object: A geneda object

Value

Character vector

Examples

data(Snail1KO)
counts <- as.matrix(Snail1KO$rawCounts)
counts <- counts[rowSums(counts >= 10) >= 3, ]
meta <- Snail1KO$metadata
rownames(meta) <- meta$Sample
norm <- log2(t(t(counts) / colSums(counts)) * 1e6 + 1)
obj <- GenEDA(normalized = norm, metadata = meta, counts = counts)
obj <- FindVariableFeatures(obj, nfeatures = 500)
head(HVGs(obj))
#> [1] "THY1"   "CCL2"   "SSX1"   "GPX1"   "AKR1C2" "EZH2"