Snail1KO dataset

Dataset from Maturi, et al. 2018, (ENA:ERP019920, E-MTAB-5244)

Usage

Snail1KO

Format

A list containing raw counts and metadata

rawCounts

A dataframe of raw counts expression matrix

metadata

A dataframe of associated metadata

Source

Maturi et al., 2018; ENA: ERP019920; E-MTAB-5244

Examples

data(Snail1KO)
dim(Snail1KO$rawCounts)
#> [1] 39364     6
Snail1KO$metadata
#>                Sample          Disease Genotype        CellLine_CellType
#> ERR1736465 ERR1736465 breast carcinoma       WT HS578T - epithelial cell
#> ERR1736466 ERR1736466 breast carcinoma       WT HS578T - epithelial cell
#> ERR1736467 ERR1736467 breast carcinoma       WT HS578T - epithelial cell
#> ERR1736468 ERR1736468 breast carcinoma Snai1_KO HS578T - epithelial cell
#> ERR1736469 ERR1736469 breast carcinoma Snai1_KO HS578T - epithelial cell
#> ERR1736470 ERR1736470 breast carcinoma Snai1_KO HS578T - epithelial cell