TL;DR UMAPs are perhaps the easiest way of gaslighting yourself (now with pretty color palettes and new and exciting shapes!) Interpret with caution and avoid the pitfalls of non-linear reductions...
TL;DR Multiome data lets you simultaneously measure gene expression and open chromatin regions giving a glimpse of both expression state and regulatory potential. Multivelo lets you model the timi...
TL;DR Exploratory data analysis (EDA) helps you understand what is driving variation in your data before formal modeling. I developed RGenEDA to sit between raw preprocessing and formal modeling; ...
TL;DR Future-you doesn’t have the memory present-you thinks you have. ✅ Use Git / GitHub ✅ Develop an organizational style, and keep it consistent ✅ Document. Document. Document. Who this post...
TL;DR Pixi is a blazing-fast, project-based package and environment manager built by the creators of Mamba. I can’t believe I didn’t switch sooner, it is literally a game-changer. My 3 Major Qual...
TL;DR Learning bioinformatics is less about instant wins and more about learning to persist through repeated failure, and that persistence is the real skill. Bioinformatics: The Wall. Earlier to...